PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02605.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 199aa    MW: 22486.9 Da    PI: 4.2199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02605.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192070155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+ykGVr +k +g+Wv+eIr p++   r r++lg+f+t+e+Aa+a +aa  +l+g
  Rsa1.0_02605.1_g00001.1 20 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTPEKAARAFDAAQFCLRG 70
                             89*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-202079IPR016177DNA-binding domain
CDDcd000181.26E-292080No hitNo description
PfamPF008472.7E-122070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-292179IPR001471AP2/ERF domain
SMARTSM003807.7E-302184IPR001471AP2/ERF domain
PROSITE profilePS5103222.1152178IPR001471AP2/ERF domain
PRINTSPR003675.5E-102233IPR001471AP2/ERF domain
PRINTSPR003675.5E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVKKAMNEEE AEMRNSSMQS KYKGVRKRKW GKWVSEIRLP NSRERIWLGS FDTPEKAARA  60
FDAAQFCLRG RQSGFNFPDN PPSISGGRSL TPPEIREAAA RFANGQDDII ISVREEEESV  120
LSETRPESPS TSVSEVAMSS ATTLDYDLSF LETLPSDFGM FPSFDDFSDG FSGDQFTEVL  180
PVEDYGELIF DDSLFLWDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0083902e-40AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds.
GenBankBT0061912e-40BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds.
GenBankCP0026842e-40CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT29M82e-40AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106149.11e-120PREDICTED: ethylene-responsive transcription factor ERF018
SwissprotQ9S7L59e-89ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLM4DHA51e-121M4DHA5_BRARP; Uncharacterized protein
STRINGBra015882.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-78ERF family protein